Data import#
These tutorials explain how to import data from different technologies and tools into InSituPy.
Build an
InSituData object from custom dataTutorial on how to generate an InSituData object from scratch.
Read data from QuPath
Tutorial showing how to export data from QuPath and read it with read_qupath_project or read_qupath.
Perform segmentation with Proseg and add the results to
InSituDataTutorial on how to improve cell segmentation with Proseg and add the data to InSituData for downstream analysis.
Align Visium and Xenium data
Tutorial on how to align Visium spatial transcriptomics data to Xenium data for integrating data from different spatial technologies on the same tissue sample.