Tutorials#
Notebooks demonstrating the use of InSituPy for analyzing single-cell spatial transcriptomics data.
The tutorial is structured in three main topics:
Preprocessing of samples
Tutorials focusing on preprocessing steps that are necessary before actually getting started with the analysis.
Analysis of individual samples
Tutorials about data loading and analysis of individual samples using the InSituData class.
Multi-sample analysis
This set of tutorials focuses on the analysis of multiple samples using the InSituExperiment class.
Manuscript-related analyses
Notebooks including analyses shown in the manuscript.