Getting started#
To help you get started with InSituPy, you can find a collection of different tutorials here. These are divided into the following six topics:
Preparations
Tutorials focusing on preparatory steps that are necessary before actually getting started with the analysis, including download of datasets and cropping of whole slide images.
Step-by-step analysis
Step-by-step demonstration on how to perform data analysis using InSituPy and the InSituData class.
Multi-sample analysis
This set of tutorials focuses on the analysis of multiple samples using the InSituExperiment class.
Data import
Tutorials explaining how to import data from different technologies or tools.
Plotting functionalities
Tutorials introducing different plotting functionalities.
Manuscript-related analyses
Notebooks including analyses shown in the manuscript.