Multi-sample analysis

This set of tutorials introduces the analysis of multiple samples using InSituPy’s InSituExperiment class.

Introduction to the InSituExperiment class

Notebook introducing the concepts behind the InSituExperiment class to analyze multiple samples.

Introduction to the InSituExperiment class

Generating pseudobulk data

Notebook showing how to generate pseudobulk data from an InSituExperiment class.

Performing pseudobulking on the InSituExperiment object