Index _ | A | B | C | D | F | G | I | L | M | P | Q | R | S | T | V _ __getitem__() (insitupy.InSituExperiment method) __init__() (insitupy.AnnotationsData method) (insitupy.BoundariesData method) (insitupy.CellData method) (insitupy.ImageData method) (insitupy.InSituData method), [1] (insitupy.InSituExperiment method) (insitupy.MultiCellData method) (insitupy.RegionsData method) __len__() (insitupy.InSituExperiment method) __repr__() (insitupy.InSituData method) (insitupy.InSituExperiment method) _check_obs_uniqueness() (insitupy.InSituExperiment method) A add() (insitupy.InSituExperiment method) annotations (insitupy.InSituData attribute) AnnotationsData (class in insitupy) append_metadata() (insitupy.InSituExperiment method) assign_annotations() (insitupy.InSituData method) assign_geometries() (insitupy.InSituData method) assign_regions() (insitupy.InSituData method) B BoundariesData (class in insitupy) C cell_abundance_along_axis() (in module insitupy.plotting) cell_expression_along_axis() (in module insitupy.plotting) CellData (class in insitupy) cells (insitupy.InSituData attribute) collection (insitupy.InSituExperiment attribute) collection() (insitupy.InSituExperiment method) concat() (insitupy.InSituExperiment method) copy() (insitupy.InSituData method) (insitupy.InSituExperiment method) crop() (insitupy.InSituData method) D data (insitupy.InSituExperiment attribute) data() (insitupy.InSituExperiment method) dge() (insitupy.InSituExperiment method) F from_config() (insitupy.InSituExperiment method) from_insitudata (insitupy.InSituData attribute) from_regions() (insitupy.InSituExperiment method) G generate_collection() (insitupy.InSituExperiment method) get_loaded_modalities() (insitupy.InSituData method) get_n_cells() (insitupy.InSituExperiment method) I ImageData (class in insitupy) images (insitupy.InSituData attribute) import_annotations() (insitupy.InSituData method) import_regions() (insitupy.InSituData method) InSituData (class in insitupy) InSituExperiment (class in insitupy) insitupy._core module, [1] insitupy.io module insitupy.plotting module iterdata() (insitupy.InSituExperiment method) L list_quicksaves() (insitupy.InSituData method) load_all() (insitupy.InSituData method) (insitupy.InSituExperiment method) load_annotations() (insitupy.InSituData method) (insitupy.InSituExperiment method) load_cells() (insitupy.InSituData method) (insitupy.InSituExperiment method) load_images() (insitupy.InSituData method) (insitupy.InSituExperiment method) load_quicksave() (insitupy.InSituData method) load_regions() (insitupy.InSituData method) (insitupy.InSituExperiment method) load_transcripts() (insitupy.InSituData method) (insitupy.InSituExperiment method) M metadata (insitupy.InSituData attribute) (insitupy.InSituExperiment attribute) metadata() (insitupy.InSituExperiment method) module insitupy._core, [1] insitupy.io insitupy.plotting MultiCellData (class in insitupy) P path (insitupy.InSituData attribute) (insitupy.InSituExperiment attribute) path() (insitupy.InSituExperiment method) plot_cellular_composition() (in module insitupy.plotting) plot_colorlegend() (in module insitupy.plotting) plot_dimred() (insitupy.InSituData method) plot_expr_along_obs_val() (insitupy.InSituData method) plot_overview() (in module insitupy.plotting) plot_spatial() (in module insitupy.plotting) plot_umaps() (insitupy.InSituExperiment method) Q query() (insitupy.InSituExperiment method) quicksave() (insitupy.InSituData method) quicksave_dir (insitupy.InSituData attribute) R read() (insitupy.InSituData method) (insitupy.InSituExperiment method) read_celldata() (in module insitupy.io) read_multicelldata() (in module insitupy.io) read_qupath_geojson() (in module insitupy.io) read_shapesdata() (in module insitupy.io) read_xenium() (in module insitupy) regions (insitupy.InSituData attribute) RegionsData (class in insitupy) reload() (insitupy.InSituData method) remove_history() (insitupy.InSituData method) (insitupy.InSituExperiment method) remove_modality() (insitupy.InSituData method) S sample_id (insitupy.InSituData attribute) save() (insitupy.InSituData method) (insitupy.InSituExperiment method) save_colorlegends() (insitupy.InSituData method) saveas() (insitupy.InSituData method) (insitupy.InSituExperiment method) show() (insitupy.InSituData method) (insitupy.InSituExperiment method) slide_id (insitupy.InSituData attribute) store_geometries() (insitupy.InSituData method) T transcripts (insitupy.InSituData attribute) V viewer (insitupy.InSituData attribute) volcano_plot() (in module insitupy.plotting)
