# Getting started

To help you get started with **InSituPy**, you can find a collection of different tutorials here. These are divided into the following six topics:

```{eval-rst}
.. card:: Preparations
    :link: 01_preparations/index
    :link-type: doc
    :link-alt: Preparations

    Tutorials focusing on preparatory steps that are necessary before actually getting started with the analysis, including download of datasets and cropping of whole slide images.

.. card:: Step-by-step analysis
    :link: 02_demo_analysis/index
    :link-type: doc
    :link-alt: Analysis demo

    Step-by-step demonstration on how to perform data analysis using `InSituPy` and the `InSituData` class.

.. card:: Multi-sample analysis
    :link: 03_multisample_analysis/index
    :link-type: doc
    :link-alt: Multi-sample analysis tutorials

    This set of tutorials focuses on the analysis of multiple samples using the `InSituExperiment` class.

.. card:: Data import
    :link: 04_data_import/index
    :link-type: doc
    :link-alt: Data import tutorials

    Tutorials explaining how to import data from different technologies or tools.


.. card:: Plotting functionalities
    :link: 05_plotting/index
    :link-type: doc
    :link-alt: Plotting tutorials

    Tutorials introducing different plotting functionalities.

.. card:: Manuscript-related analyses
    :link: 06_publication/index
    :link-type: doc
    :link-alt: Publication-related analyses

    Notebooks including analyses shown in the manuscript.

```


```{toctree}
:hidden: false
:maxdepth: 2

01_preparations/index.md
02_demo_analysis/index.md
03_multisample_analysis/index.md
04_data_import/index.md
05_plotting/index.md
06_publication/index.md
```